PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052629001
Common NameGSBRNA2T00052629001, LOC106386094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 221aa    MW: 23971.8 Da    PI: 4.8162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052629001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.6e-1469118155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a ++l+g
  GSBRNA2T00052629001  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVASLALKG 118
                          5699**975..6*********843...5*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-1669126IPR016177DNA-binding domain
SMARTSM003803.1E-2270132IPR001471AP2/ERF domain
PROSITE profilePS5103218.59770126IPR001471AP2/ERF domain
CDDcd000181.24E-2571126No hitNo description
PfamPF008471.3E-771118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2371126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSNSSDSPTT GNKQTFNVPS IALPSKSSDQ SLQTSPGSSS SPSPTPRPSL VADGSPARIT  60
ATRTSGRHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VASLALKGSE  120
SVLNFPGLVL SYVAPASNSA KDIRAAAARA AEMKQPGKEE EEEEALYSSL EFMDEEAMLN  180
MPSLFTEMAE GMLMSPPRMT DLWMDDSQEN HEGDSLWSYK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052629001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681441.11e-160PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-81ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A078H5971e-160A0A078H597_BRANA; BnaC03g15720D protein
STRINGBra029147.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-71ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]